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Herpesviruses Assays
M. Prichard, Ph.D., University of
Alabama Birmingham
Herpes Screening Process
A
request for the herpes panel initiates the following process.
Initially, the standard HSV-1, HSV-2, VZV, and EBV screens and toxicity
assays are run. If any activity is observed, the routine confimatory
assays are run. If the initial activity results are confirmed,
additional viruses are screened. Requests for single viruses or
combinations of the four primary viruses are also screened in this
manner.
This
strategy is designed to identify the 95% of compounds that are inactive,
or too toxic to test. Further, if no activity is noted against EBV,
HHV-8 will not be
run. If activity is not seen against CMV, then HHV6 will
not be run. These sets
of viruses are closely related and activity/inactivity correlates well
to the other herpes viruses of the same subfamily.
General Approach for
Determining Antiviral Activity and Toxicity for Herpesviruses
Our approach for
determining antiviral efficacy and toxicity of potential antiviral
agents is to gain enough definitive information such that a compound can
be taken into animal efficacy and toxicology studies and then into Phase
I/II Clinical Studies. The experimental approach is based upon the
following: 1) in our previous experience with this screening contract,
we have found that consistently about 50-75% of the samples submitted
will not have activity against any of the herpesviruses, or will be too
toxic to evaluate; therefore, an inexpensive, rapid assay such as a CPE-inhibition
assay that is semi-automated needs to be used initially to screen out
the negatives; 2) all screening assays are conducted in low passage
human cells; 3) each assay system contains a positive control (ACV, GCV,
CDV) and a negative control (AZT); 4) efficacy should be demonstrated by
at least two different assay systems that detect functional biologic
activity; 5) efficacy should be confirmed using low passaged clinical
isolates and drug resistant mutants whenever available; 6) efficacy
against EBV is confirmed using a hybridization assay that quantifies DNA
synthesis; 7) toxicity is determined using both resting and
proliferating human fibroblast cells and proliferating lymphoblastic
cells; and 8) for selected compounds, toxicity in human myeloid and
erythroid progenitor cells is assessed.
A. Screening Assays for
Activity Against HSV-1, HSV-2, CMV, and VZV
All the screening
assay systems utilized have been selected to show specific inhibition of
a biologic function, i.e., cytopathic effect (CPE) in susceptible human
cells. In the CPE-inhibition assay, drug is added 1hr prior to infection
so the assay system will have maximum sensitivity and detect inhibitors
of early replicative steps such as adsorption or penetration as well as
later events. To rule out non-specific inhibition of virus binding to
cells all compounds that show reasonable activity in the CPE assay are
confirmed using a classical plaque reduction assay in which the drug is
added 1hr after infection. In our system, this is the “gold standard” to
which all other assay systems are compared. In the case where a compound
blocks attachment, it will show up positive in the CPE assay, but may be
negative by plaque assay. In this case, the plaque assay is repeated
with drug being added prior to viral infection. Using this approach we
have been able to identify compounds that inhibit virus adsorption.
These assay systems also can be manipulated by increasing the
pretreatment time in order to demonstrate antiviral activity with
oligodeoxynucleotides and/or peptides and by delaying addition of drug
after infection, information regarding which step in the virus life
cycle is inhibited (i.e. early vs. late functions) can be gained.
1. Efficacy. In
all the assays used for primary screening, a minimum of six drug
concentrations was used covering a range of 100
mg/ml
to 0.03 mg/ml,
in 5-fold increments. These data allow us to obtain good dose response
curves. From these data, we calculated the dose that inhibited viral
replication by 50% (effective concentration 50; EC50) using
the computer software program MacSynergy II by M.N. Prichard, K.R.
Asaltine, and C. Shipman, Jr., University of Michigan, Ann Arbor,
Michigan.
2. Toxicity. The
same drug concentrations used to determine efficacy were also used on
uninfected cells in each assay to determine toxicity of each
experimental compound. The drug concentration that is cytotoxic to cells
as determined by their failure to take up a vital strain, neutral red, (cytotoxic
concentration 50; CC50) was determined as described above.
Since the greatest
need for new drugs to treat herpesvirus infections are for systemic
diseases such as neonatal herpes, CMV, and disseminated VZV, it is
likely that these drugs will need to be given parenterally. It is very
important therefore to determine the toxicity of new compounds on
dividing cells at a very early stage of testing. We have found that a
cell proliferation assay using HFF cells is a very sensitive assay for
detecting drug toxicity to dividing cells and the drug concentration
that inhibits cell growth by 50% (IC50) was calculated as
described above. In comparison with four human diploid cell lines and
vero cells, HFF cells are the most sensitive and predictive of toxicity
for bone marrow cells.
3. Assessment of
Drug Activity. To determine if each compound has sufficient
antiviral activity that exceeds its level of toxicity, a selectivity
index (SI) was calculated according to CC50/EC50.
This index, also referred to as a therapeutic index, was used to
determine if a compound warrants further study. For these studies, a
compound that had an SI of 10 or greater was evaluated in additional
assay systems.
B. Confirmation of
Antiviral Activity and Toxicity for HSV, CMV, and VZV
1. HSV-1 and HSV-2.
Compounds that showed activity in the CPE-inhibition assay were
confirmed using the plaque reduction assay. Susceptibility of additional
virus strains including both lab passaged and clinical isolates was
determined for selected compounds. A battery of ACV resistant HSV
strains was also utilized.
2. CMV. Compounds
that had activity in the CPE-inhibition assay were confirmed using the
plaque reduction assay in HFF cells. A variety of laboratory, clinical,
and GCV resistant isolates are also available for testing.
3. VZV. Compounds
with activity in a CPE assay were evaluated further in a plaque
reduction assay.
C. Assay Systems for
Determining Antiviral Activity Against EBV and Toxicity to Lymphoblastic
Cells
1. EBV.
2. Screening Assay for
EBV Activity. The initial system to be used to determine antiviral
activity against EBV will be VCA production in Daudi cells using an
ELISA assay. As in all the other assays, six concentrations of drug
covering a range of 50 mg/ml
to 0.03 mg/ml
will be utilized. Using the results obtained from untreated and drug
treated cells an EC50 can be calculated. Selected compounds
that have good activity against EBV VCA production without toxicity will
be tested for their ability to inhibit EBV DNA synthesis.
4. Toxicity. In
each assay system utilized, drug treatment of uninfected cells is
incorporated to obtain as much toxicity data as possible. For
calculation of the SI, it is very important that the data on toxicity be
at least as reliable as the results for efficacy. As part of our EBV
primary screening and confirmation studies we obtain preliminary
evidence of toxicity as part of our assay system using a colormetric
method using MTS.
5. Confirmation of
drug activity against EBV DNA production using in situ DNA hybridization
assay. All compounds that have an SI >10 in the screening assay or
ones selected by the project officer will be confirmed in a
hybridization assay that measures the amount of EBV DNA produced by
P3HR-1 infected cells. As in all other assay systems utilized, a wide
range of drug concentrations will be utilized so an accurate EC50
can be calculated. Uninfected control cells treated with drug will also
be utilized as another measure of drug toxicity. It is entirely possible
however, that results obtained using assays for VCA production and DNA
synthesis may not always correlate since the two events may be
independent.
D.
Assay
systems for Determining Antiviral Activity Against HHV-6, HHV-8 and
Toxicity to Lymphoblastic Cells.
1. Cells: Cord
Blood Lymphocytes (CBL) and the Human T cell lymphoblastoid lines, HSB-2
and SupT-1, are used in screening assays for HHV-6. CBL are isolated
from fresh heparinized umbilical cord blood and are infected with the
Z29 strain of HHV-6. The body cavity based B-cell lymphoma cell line,
BCBL-1, are used for screening against HHV-8.
2. Viruses: There
are two variants of HHV-6 known as type A variants or type B variants.
Our prototype HHV-6 type A variant is the GS strain which is propagated
in HSB-2 or SupT-1 cells. Our prototype HHV-6 type B variant is Z29 (ATCC,
Rockville, Md.) which is grown as a stock in CBL. The HHV-8 is
propagated in a latent state in the BCBL-1 cell line. Lytic growth of
the HHV-8 can be induced by the addition of the phorbol ester, TPA.
3. HHV-6 Infection and
Drug Treatment: In all assays used for screening of antiviral
drugs, six concentrations of each drug ranging from 100
mg/ml
to 0.03 mg/ml
drug are tested to obtain the EC50, EC90, CC50,
and IC50, values. The initial assay for HHV-6 is a flow
cytometric analysis of HHV-6 antigens in either HSB-2 cells (HHV-6A),
CBL (HHV-6B), or SupT-1 (6A or 6B).
4. HHV-8 Infection and
Drug Treatment: Lytic infection of HHV-8 in BCBL-1 cells will be
carried out as stated above. The initial assay for HHV-8 is a flow
cytometric analysis of HHV-8 antigens in BCBL-1 cells. As with the
other herpesvirus assays, these assays will contain the positive
(infected and untreated cells) and negative (uninfected or uninduced and
drug treated cells) controls needed for effective analysis and
cytotoxicity determinations.
E. Laboratory
Procedures for Determining Antiviral Efficacy and Toxicity for
Herpesviruses
1. Preparation of
compounds for in vitro testing
The letter of
agreement with the drug sponsor included in the RFP indicates that the
sponsor will provide pertinent information regarding structure,
molecular weight, solubility, toxicity, and any handling precautions the
sponsor is aware of. After receipt of the compound, they are entered
into a log book and into the drug screening inventory data base, and are
stored according to the location assigned. The compounds are then
weighed using an analytical balance and reconstituted in the appropriate
vehicle. It is critical at this point that solubility data be provided
by the sponsor so drug is not wasted determining the solubility. If the
compound is water soluble, it will be dissolved in tissue culture media
without serum at 1 mg/ml and diluted for use as indicated below in the
description of the assay system. If the compound is not water soluble,
then it is automatically dissolved in DMSO at a concentration of 10
mg/ml and diluted for use in each assay. This has worked very well for
both the assays in HFF cells as well as the lymphoblastic cells as DMSO
is not toxic at the final concentration utilized (<1.0%).
2. Screening and
confirmation assays for HSV, VZV, and CMV
a. Preparation of
Human Foreskin Fibroblast Cells
Newborn human
foreskins are obtained from UAB or Brookwood Hospital as soon as
possible after circumcisions are performed and placed in minimal
essential medium (MEM) containing vancomycin, fungizone, penicillin, and
gentamicin, at the usual concentrations, for four hours at room
temperature. The medium is then removed, the foreskin minced into small
pieces and washed repeatedly until red cells are no longer present. The
tissue is then trypsinized using trypsin at 0.25% with continuous
stirring for 15 min at 37C in a CO2 incubator. At the end of
each 15 min period, the tissue is allowed to settle to the bottom of the
flask. The supernatant containing cells is poured through sterile
cheesecloth into a flask containing MEM and 10% fetal bovine serum (FBS).
The flask containing the medium is kept on ice throughout the
trypsinizing procedure. After each decanting of cells, the cheese cloth
is washed with a small amount of MEM containing serum. Fresh trypsin is
added each time to the foreskin pieces and the procedure repeated until
no more cells become available. The cell-containing medium is then
centrifuged at 1000 RPM at 4C for ten min. The supernatant liquid is
discarded and the cells resuspended in a small amount of MEM with 10%
FBS. The cells are counted using a Coulter Counter and then placed in an
appropriate number of 25 cm2 tissue culture flasks. As cells
become confluent and need trypsinization, they are gradually expanded
into 175 cm2 flasks. The cells are maintained on vancomycin
and fungizone to passage three. Cell lines will be tested periodically
for the presence of mycoplasma contamination using the Hoechst
fluorescent stain for mycoplasma DNA. Cells are utilized only until
passage 10.
b. Cytopathic
Effect Inhibition Assay.
Low passage (3-10)
human foreskin fibroblast (HFF) cells are trypsinized, counted, and
seeded into 96 well tissue culture plates at a cell concentration of 2.5
x 104 cells in 0.1 ml of MEM supplemented with 10% FBS. The
cells are then incubated for 24h at 37oC in a 5% CO2
- 95% air, 90% humidified atmosphere. The media is then removed and 100
µl of MEM containing 2% FBS is added to all but the first row. In the
first row, 125 µl of media containing the experimental drug is added in
triplicate wells. Media alone is added to both cell and virus control
wells. The drug is the first row of wells is then diluted serially 1:5
throughout the remaining wells by transferring 25 µl using a Beckman
Bio-Mek Liquid Handling Machine. The plates are then incubated for 60
min and 100 µl of an appropriate virus concentration added to each well,
excluding cell control wells which received 100 µl of MEM. For HSV-1 and
HSV-2 assays, the virus concentration utilized is 1000 Plaque Forming
Units (PFU) per well. For CMV and VZV assays, the virus concentration
added is 2500 and 1000 PFU per well, respectively. The plates are then
incubated at 37oC in a CO2 incubator for three
days for HSV-1 and HSV-2, 10 days for VZV, or 14 days for CMV. After the
incubation period, media is aspirated and the cells stained with a 0.1%
crystal violet in formalin solution for 4h. The stain is then removed
and the plates rinsed using tap water until all excess stain is removed.
The plates are allowed to dry for 24h and the amount of CPE is each row
determined using a BioTek Multiplate Autoreader. EC50 and IC50
values are determined by comparing drug treated and untreated cells
using a computer program.
c. Plaque Reduction
Assay for HSV-1 and HSV-2 using Semi-Solid Overlay.
Two days prior to
use, HFF cells are trypsinized, counted, and plated into six well plates
and incubated at 37oC with 5% CO2 and 90%
humidity. On the date of assay, the drug is made up at twice the desired
concentration in 2x MEM and then serially diluted 1:5 in 2x MEM to give
six concentrations of drug. The drug concentrations utilized are usually
200 µg/ml down to 0.06 µg/ml. The virus to be used is diluted in MEM
containing 10% FBS to a desired concentration which will give 20-30
plaques per well. The media is then aspirated from the wells and 0.2 ml
of virus is added to each well in triplicate with 0.2 ml of media being
added to drug toxicity wells. The plates are then incubated for 1h with
shaking every fifteen min. After the incubation period, an equal amount
of 1% agarose is added to an equal volume of each drug dilution. This
will give final drug concentrations beginning with 100 µg/ml and ending
with 0.03 µg/ml and a final agarose overlay concentration of 0.5%. The
drug agarose mixture is applied to each well in 2 ml volume and the
plates are incubated for three days, after which the cells are stained
with a 1.5% solution of neutral red. At the end of the 4-6h incubation
period, the stain is aspirated, and plaques counted using a
stereomicroscope at 10x magnification.
d. VZV Plaque
Reduction Assay - Semi-Solid Overlay.
The procedure is
essentially the same as for the HSV plaque assay described above with
two exceptions:
After addition of the
drug, the plates are incubated for ten days. On days 3 and 6, an
additional 1 ml overlay with equal amounts of 2x MEM and 1% agarose are
added.
e. CMV Plaque Assay -
Semi-Solid Overlay.
The procedure again
is nearly the same as for HSV with a few minor changes. The agarose used
for both the initial overlay and the two subsequent overlays is 0.8%
rather than 1%. The assay is incubated for 14 days with the additional 1
ml overlays being applied on days 4 and 8.
f. Plaque Reduction
Assays Using Liquid Medium Overlay.
During a previous
contract period, we found that some large or highly charged molecules
that are active in the CPE - inhibition assay were inactive in the
plaque assay because the drug failed to diffuse through the agarose
overlay. Therefore, we have modified the plaque assay for confirmation
studies, so that the overlay medium is liquid rather than semi-solid.
The procedure for the liquid overlay plaque assay is similar to that
using the agarose overlay. The procedure for adding the virus is the
same as for the regular plaque assay. The drugs are made up at the
desired concentrations in MEM with 2% FBS. For HSV-1 and HSV-2 assays,
an antibody preparation obtained from Baxter Health Care Corporation is
diluted 1:500 and added to the media that the drug is diluted in to
limit extracellular spread of virus through the media. For VZV and CMV,
no antibody in the overlay is necessary. For the CMV and VZV assays,
additional medium without new drug is added on day five and allowed to
incubate for a total of 8 and 10 days, respectively. At the end of the
incubation period for all of the assays, 2 ml of a 6.0% neutral red
solution is added to each well and incubated for six h. The liquid is
then aspirated off and plaques enumerated using a stereomicroscope.
3. Screening and
Confirmation Assays for EBV
a. Cells.
The two lymphoid cell
lines, Raji and Daudi derived from Burkitt's lymphoma are used. The Raji
cell line is a non-producer of viral gene products associated with the
productive viral cycle. The Daudi cell line is a low level producer,
i.e., fewer than 1% of the cells express EA spontaneously. These cells
are equally susceptible to superinfection by the P3HR-1 virus as
determined by EBV VCA expression. The cells are maintained at 37oC
in a humidified atmosphere with 5% CO2, in culture with
RPMI-1640 medium containing 10% heat inactivated FBS, 100 u/ml
Penicillin, 25 μg/ml gentamicin and 2mM L-glutamine. The cells are
passaged twice weekly and the cell concentration adjusted to 2x106/ml
for use.
b. Virus.
There are two
prototypes of infectious EBV. One is exemplified by the virus derived
from supernatant fluids of the P3HR-1 cell line. This cell line produces
non-transforming virus that induces the production of VCA after primary
infection or superinfection of B cell lines. The other prototype is
exemplified by the B95-8 virus. This virus immortalizes cord blood
lymphocytes and induces tumors in marmosets. It does not, however,
induce an abortive productive infection even in cell lines harboring EBV
genome copies. We use the P3HR-1 strain in all screening assays. For
virus production, P3HR-1 cells are cultured at a concentration of 2x105/ml
for two weeks in medium containing 2% FCS at 34oC in a
humidified atmosphere with 5% CO2. Concentrated virus then is
prepared from the supernatant of the culture by centrifugation at
12,000g for 90 min in a Sorvall Centrifuge. The pellets are resuspended
in RPMI-1640 medium at 1/100 of the original volume and stored at -70oC.
c. Antibodies.
Murine monoclonal
antibody to EBV VCA, (Chemicon International, Inc., Temecula, Calif.) is
used in immunofluorescence assays and ELISA. Optimal monoclonal antibody
concentration is determined by antibody titration for each assay system.
For single fluorochrome analyses FITC-labelled goat anti-mouse total IgG
(Southern Biotechnology Associates, Birmingham, Ala.) is used as the
second antibody.
d. EBV superinfection
and drug treatment.
Superinfection is
initiated by the incubation of 0.5 ml of an appropriate concentration of
EBV with 106 cells/tube in a total of 1 ml/tube. In most
cases this amounts to a multiplicity of infection (MOI) of 0.1-0.2 based
on VCA induction in Daudi cells. After adsorption at 37oC for
1h, 3 ml of RPMI-1640 medium is added. The cells are pelleted by
centrifugation and supernatants discarded. Drug concentrations (0.08,
0.4, 2, 10, 50 µg/ml) in 4 ml of RPMI-1640 are added to the appropriate
tubes. RPMI-1640 is added to positive and negative control tubes and
each drug concentration is added to Daudi cells without virus for
toxicity controls. After incubation the cells in each tube are counted
using a Coulter Counter and washed three times with phosphate buffered
saline solution (PBS) (without Ca and Mg). Each cell suspension is
adjusted to a concentration of 4.0 x 106 cells/ml in PBS. For
EBV IFA and DNA hybridization assays, two sets of slides are prepared
with 4 x 104 cells/spot for each cell suspension, and
air-dried overnight.
e.
Immunofluorescence assay.
The infected and drug
treated cells are counted and washed three times with PBS. 4 x 104
cells in PBS are spotted on multiwell slides and air dried. The cells
are then fixed for 10 min in acetone, washed in PBS and stained for
immunofluorescence with the mouse monoclonal antibodies and FITC-labeled
goat anti-mouse IgG. EBV VCA specific antibodies are used in the
immunofluorescence assays. FITC-labeled goat anti-mouse IgG (Southern
Biotechnology Associates, Birmingham, Ala.) is used as the second
antibody. The slides are counterstained with 0.1% Evan's blue for 5 min
and mounted with 10% glycerin in PBS. The number of FITC-positive cells
on each smear is determined using a Nikon fluorescence microscope. 500
cells are counted in each spot. The number of cells expressing EBV VCA
is calculated by multiplying the fraction of antigen positive cells by
the number of cells/ml in the culture at the time of harvest. The drug
concentration is plotted against the number of antigen positive cells/ml
using a computer program and EC50 and EC90 values
are calculated.
f. ELISA.
During the previous
contract period we developed an ELISA for screening antiviral drugs for
activity against EBV VCA. Daudi cells infected with P3HR-1 virus and
treated with drug are harvested by centrifugation and washed three times
with PBS. The cells are pelleted and suspended to a concentration of 4 x
106 cells/ml in PBS. 100 µl of each suspension is dispensed
in triplicate into a 96-well plate, air-dried and fixed with 95% Ethanol
and 5% Acetic Acid. Uninfected cells are prepared in the same manner and
used as controls. After washing the plate, primary and secondary
antibodies diluted in 1% bovine serum albumin containing 0.05% Tween-20
are added sequentially to each well and incubated at room temperature.
Antibody additions are separated by 3 washes with PBS containing 0.005%
Tween-20. O-phenyldiamine (OPD) substrate is added and the reaction
stopped with 3N H2SO4 after ~10 min. The optical
density is measured at 492 nm and the EC50 extrapolated using
the computer software program described earlier.
g. Evaluation of
antiviral agents against EBV DNA replication.
The Enzo Simply
Sensitive Horseradish Peroxidase-AEC In Situ Detection System for EBV (Enzo
Diagnostics, Farmingdale, N.Y.) is used to determine antiviral activity
against DNA synthesis. Detection and staining is performed according to
the manufacturer's instructions. The following is a brief description:
Three days after superinfection and drug treatment, slides are prepared
with 4 x 104 cells/spot for each cell suspension, air-dried
overnight. The slides are fixed in Acetone for 10 min. A biotin labelled
EBV probe is added to each spot of fixed cells and the slide is covered
with a glass coverslip. The slide is then heated on a hot plate at 95C
for five min. After heating, the slide is placed at 37C on a slide
warmer for 30-60 min, for the DNAs to anneal. The coverslips are then
removed and the Post Hybridization Reagent is added to each spot. After
incubation for 10 min and rinsing with washing buffer, Detection Reagent
is applied. This is left on for 30-60 min on a slide warmer and then
washed off with washing buffer. Chromogen Substrate Solution is added
and incubated for 20 min on a slide warmer. The slides are washed and
counter stained with Blue Counterstain. The slides are then rinsed with
deionized water and mounted with water. The slides are viewed in a light
microscope under a magnification of 400X. Positive cells appear as red
spots. All the cells are counted in several fields. The fraction of red
spots in the total number of cells counted multiplied by 100 reflects
the percent hybridization.
h. Primary infection
assay using B95-8 in human cord blood lymphocytes.
The primary infection
of umbilical cord blood lymphocytes with the transforming strain B95-8
of EBV induces the expression of the virus-associated nuclear antigen (EBNA)
in the cell (140). It is also known that B95-8 virus induces cellular
DNA synthesis after infection of CBL (141). The availability of EBNA
virus-infected cells in culture allows the identification and
quantitation of EBV-positive cell antigens by indirect IFA staining and
FACS. Cord blood lymphocytes separated by ficoll-hypaque gradient are
cultured in complete RPMI-1640 as described below. The EBV-B95-8 is
produced by incubating the B95-8 cell line in RPMI -1640 plus 10% Fetal
calf serum for 10-14 days. The supernatant is collected and stored at
0-4C. One million CBL are infected by incubation with 1 ml of the B95-8
supernant for 1h. The virus is removed by centrifugation. After one wash
with RPMI-1640 the infected cells are treated with antiviral drugs as
described earlier for P3HR-1 superinfection. The cell cultures are
incubated for 4-6 days. Cell harvesting and immunofluorescent staining
is the same as described earlier.
4. Assays Against
HHV-6A, HHV-6B, and HHV-8.
a. Cells.
Cord Blood
Lymphocytes (CBL) Cells: Fresh heparinized umbilical cord blood was
obtained from the University of Alabama at Birmingham Hospital and
diluted 1:1 with Hank’s balanced salt solution and layered on a
Histopaque 1077 (Sigma Chemical Co., St. Louis, Mo.) gradient. The
tubes were centrifuged at 1600 rpm for 30 min at room temperature and
serum was carefully aspirated off. The lymphocytes were removed, washed
with Hank’s balanced salt solution and centrifuged at 1200 rpm for 10
min. The supernatant was aspirated and the cells were resuspended in
RPMI 1640 containing 10% heat-inactivated FBS, 2 mM L-glutamine, 100
U/ml penicillin, 0.25 µg/ml fungizone, 25 µg/ml gentamicin, 0.1 U/ml
Interleukin-2 (Sigma, St. Louis, Mo.) and 0.5 µg/ml Phaseolus Vulagaris
agglutinin protein (PHAP). CBLs were used in the HHV-6, Z-29 (Variant
B) assays.
Human T Cell
Lymphoblastoid Line, HSB-2 Cells: The HSB-2 cells were obtained
through the NIH AIDS Research and Reference Reagent Program (Rockville,
Md.), and were propagated in RPMI 1640 containing 10% heat-inactivated
FBS, 100 U/ml penicillin, 25 μg/ml gentamicin and 2mM L-glutamine. They
were split 1:5 in a 175 cm2 flask every 3-4 days and used in
the HHV-6, GS (Variant A) assays.
BCBL-1 (body
cavity-based lymphoma) Cells: BCBL-1 cells (NIH AIDS Research and
Reference Program, Rockville, Md.) propagated in RPMI 1640 media
containing 10% FBS, 2 mM L-Glutamine, 10 µM β-Mercaptoethanol 100 μ/l
penicillin, and 25 μg/ml gentamicin were utilized in the HHV-8 assay.
b. Viruses.
There are two
variants of HHV-6 known as type A variants or type B variants. Our
prototype HHV-6 type A variant is the GS strain which is propagated in
the HSB-2 cells and has been obtained through the AIDS Research and
Reference Reagent Program, Division of AIDS, NIAID, NIH. These cells,
referred to as HSB-2/HHV-6GS, are maintained at 5 x 105
cells/ml under the same conditions and in the same media as the
uninfected HSB-2 cells. They are split every 3-4 days by addition of
uninfected cells at 9 parts to 1 part infected cells. Stock titers of
this virus of 1 X 105 both in cell-associated and cell-free
virus can be obtained by growth for 5 days. Our prototype HHV-6 type B
variant is Z29 (ATCC, Rockville, Md.) which is grown as a stock in CBL
by incubation for 10 days followed by collection, centrifugation and
freezing of the supernatant.
HHV-8, latently
expressed in the primary effusion lymphoma derived BCBL-1 cell line (NIH
AIDS Research and Reference Program, Rockville, Md.) was induced into
lytic HHV-8 expression by addition of 100 ng/ml phorbol 12-myristate
13-acetate. BCBL-1 cells were cultured in RPMI 1640 media containing
10% FBS, 2 mM L-glutamine, 10 µM β-mercaptoethanol 100 U/ml penicillin
and 25 μg/ml gentamicin.
c. Primary Antibodies.
The primary
antibodies used for the indirect IFA and FACS were selected for their
antigen specificity, low cross-reactivity with other herpesviruses and
fluorescence intensity as monitored by FACS. Monoclonal antibodies
selected for use in the HHV-6 assay systems were screened for variant
specificity and demonstrated no A or B variant cross-reactivity in the
assay systems. Monoclonal antibody 8532 (Chemicon, Temecula, Calif.)
targets HHV-6 induced early nuclear proteins and was used as a primary
antibody in the HHV-6GS assay systems at a 5 µg/ml
concentration. Monoclonal antibody 8535 (Chemicon, Temecula, Calif.)
which targets a B variant 101 kDa virion protein was used as a primary
antibody in the HHV-6Z-29 assay system at a 5 µg/ml
concentration. The HHV-8 monoclonal antibody KS8.1 (Bala Chandran,
University of Kansas Department of Microbiology, Molecular Genetics and
Immunology) targets the HHV-8 viral envelope associated glycoprotein 8.1
expressed in the late lytic phase of HHV-8 replication (Zoeteweij et
al., 1999) and was used at approximately 5 µg/ml. Monoclonal antibody
to the EBV VCA glycoprotein 125 (Chemicon, Temecula, Calif.) was used at
a concentration of 2.5 µg/ml for ELISA and 5 µg/ml for IFA.
d. Determination of
Antiviral Drug Efficacy Against HHV-6.
Serial 5-fold
dilutions of drug starting at 50 µg/ml were prepared in media. CDV was
used as a positive control. Samples for determining antiviral efficacy
were prepared by incubating 1 x 106 cells for one hour with
sufficient virus to infect approximately 35% of the cells. After
infection, the appropriate dilution of drug was added and cells
incubated for 4 to 6 days at 37C. Virus free controls were prepared by
incubating 1 x 106 cells in drug-free media for the
designated period and virus controls were prepared by incubating 1 x 106
cells for one hour with sufficient virus to infect 35% of the cells
followed by incubation in drug-free media for the designated period.
After incubation, cells were rinsed with PBS and permeabilized overnight
in methanol at -80C for use in FACS.
e. FACS Assay for HHV-6
and HHV-8.
Cells were rinsed
thoroughly with PBS and a blocking solution containing 5% FBS, 4% Normal
goat serum (NGS) and 0.5% DMSO. Cells were then incubated with the
appropriate monoclonal antibody (HHV-6 early nuclear proteins (Chemicon,
Temecula, Calif.) for HHV-6, GS variant A, a 101 kDa virion protein (Chemicon,
Temecula, Calif.) for HHV-6, Z-29 variant B, and KS8.1 for HHV-8 (Bala
Chandran, University of Kansas, Department of Microbiology, Molecular
Genetics and Immunology).
5. Screening and
Confirmation Assays for Toxicity
a. Neutral red uptake
assay – HFF Cells.
Twenty-four h prior to
assay, HFF cells are plated into 96 well plates at a concentration of 2.5
x 104 cells per well. After 24h, the media is aspirated and 125
µl of each drug concentration is added to the first row of wells and then
diluted serially 1:5 using the automated Bio-Mek Liquid Handling System in
a manner similar to that used in the CPE assay. The plates are then
incubated in a CO2 incubator at 37C for seven days. At this
time the media/drug is aspirated and 200 µl/well of 0.01% neutral red in
DPBS is added. This is incubated in the CO2 incubator for 1h.
The drug is aspirated and the cells are washed using a Nunc Plate Washer.
After removing the DPBS wash, 200 µl/well of 50% ETOH/1% glacial acetic
acid (in H20) is added. The plates are rotated for 15 min and
the optical densities are read at 550 nm on a plate reader. CC50
values are calculated using a computer program.
b. Cell proliferation
assay in HFF cells.
Twenty-four h prior to
assay, HFF cells are seeded in 6-well plates at a concentration of 2.5 x
104 cells per well in MEM containing 10% FBS. On the day of the
assay, drugs are diluted serially in MEM containing 10% FBS at increments
of 1:5 covering a range from 100 µg/ml to 0.03 µg/ml. For drugs that have
to be solubilized in DMSO, control wells receive MEM containing 1.0% DMSO.
The media from the wells is then aspirated and 2 ml of each drug
concentration is then added to each well. The cells are then incubated in
a CO2 incubator at 37C for 72h. At the end of this time, the
media-drug solution is removed and the cells washed. One ml of 0.25%
trypsin is added to each well and incubated until the cells start to come
off of the plate. The cell-media mixture is then pipetted up and down
vigorously to break up the cell suspension and 0.2 ml of the mixture is
added to 9.8 ml of Isoton III and counted using a Coulter Counter. Each
sample is counted 3 times with 2 replicate wells per sample.
c. Determination of
antiviral drug cytotoxicity and cell proliferation for non-adherent cell
lines (HSB-2, CBL, Daudi, BCBL-1).
MTS tetrazolium
cytotoxicity assay: Serial 5-fold dilutions of drug starting at 50
µg/ml were prepared in media and added to 1 x 106 cells.
Controls were prepared by incubating 1 x 106 cells in drug-free
media. After an incubation period of 3-6 days depending on the assay
system, 200 µl was transferred to a 96 well plate in duplicate. 20 µl of
MTS was added and the plate was wrapped in foil and incubated at 37C for 4
h. MTS was bioreduced by dehydrogenase enzymes found in metabolically
active cells into an aqueous soluble formazan. The quantity of formazan
product as measured by the amount of 490 nm absorbance was directly
proportional to the number of living cells in culture. Drug concentration
was plotted against the optical density of each sample and CC50
values were calculated using MacSynergy II.
Cell proliferation
assay: Serial 5-fold dilutions of drug starting at 50 µg/ml were
prepared in media and added to 1 x 106 cells. Controls were
prepared by incubating 1 x 106 cells in drug-free media. After
an incubation period of 3-4 days depending on the assay system, a Coulter
Counter is used to determine the total number of cells for each sample
(for HSB-2 and Daudi cell lines only). Drug concentration was plotted
against the total concentration of cells for each sample and IC50
values were calculated using MacSynergy II.
Bone marrow assay:
In vitro toxicity can be determined by inhibition of myeloid
[colony-forming units granulocyte/macrophage (CFU-GM)] and erythroid
[burst-forming unit-erythroid (BFU-E)] colony formation in soft agar
clonal assays. Using a 21-23 gauge needle attached to a syringe, rodent
bone marrow cells are collected from the leg bone of rats or mice by
flushing with Isocoves’ Modified Dulbecco’s medium (IMDM). A single cell
suspension is obtained by repeated aspiration through the needle.
Nucleated cells are enumerated with a hemacytometer and adjusted to the
desired cell concentration in IMDM. Murine CFU-GM assays are prepared with
2.5 x 105 nucleated cells/ml, 20% FBS, 10 ng/ml rmGM-CSF, and
0.2% agarose. BFU-E cultures include 30% FBS, 1% deionized BSA, 0.1 mM
2-ME, 4 U/ml rhEpo, 10 ng/ml rmIL-3, 2.5 x 105 nucleated
cells/ml and 0.2% agarose (140). Triplicate wells (in 6 well plates)
containing 0.1ml of drug (10X) receive 1 ml of either culture mixture for
each concentration group and slowly mixed. The cultures are allowed to
gel at 4 C and then incubated for 7 (CFU-GM) or 9 (BFU-E) days at 37 C in
a humidified atmosphere of 5% CO2 in air. Colonies are counted
using an inverted microscope. CFU-GM colonies are identified as cell
clones containing at least 40 cells. BFU-E cultures are stained with
dianisidine, and aggregates of greater than 60 hemoglobin-containing cells
are counted as erythroid colonies (141). The median inhibitory
concentration (IC50) and the 90% inhibitory concentration (IC90)
are derived from linear regression analysis of the logarithm of drug
concentration versus CFU-GM or BFU-E survival fraction.
6. Reporting of results.
a. Screening and
confirmation of efficacy and toxicity.
A monthly reporting form for screening and evaluation of antiviral
efficacy and toxicity is used for transmitting the data on a monthly basis
to the project officer. Included on the form are the month and year of
report, the profile and dates of testing, EC50 and EC90
data for efficacy of the test and control compounds, the CC50
and IC50 for the toxicity tests, the SI for each test and a
space for comments and recommendations.
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